PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G13470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 222aa    MW: 23019.9 Da    PI: 7.6434
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G13470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer33.51e-101001193453
      ZF-HD_dimer  34 eegtaaalkCaACgCHRnFH 53 
                      e +++++lkCaACgCHRnFH
  OBART06G13470.1 100 EPADPTSLKCAACGCHRNFH 119
                      44789*************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-498119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.1E-898119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKLSMFATAA AAAADRSRGG GGKHGVRAAS RVGATGGVVA GDMAKVELVL YPSVATAATS  60
TAGGGRRRDG VPGVPQEPRS EPGRTRAGRL RGVHAVVAGE PADPTSLKCA ACGCHRNFHC  120
WLLEGSPPPP PPLALPAPPM PANVLHGQLH REEETPEVRL PGVDGDEFDN NSDGSEYYDE  180
RSVSPPSPPH LPAAVVHQPY YPSAQHMLLS LGSSGQAQRL PL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054490.0AP005449.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427E01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610599.16e-23PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ6ER217e-25ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A0D3GG591e-159A0A0D3GG59_9ORYZ; Uncharacterized protein
STRINGORGLA06G0121500.11e-123(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2165755